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Cytosim
PI
Cytoskeleton Simulator
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Cytosim
PI
Cytoskeleton Simulator
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A FiberBinder has a pointer to a Fiber, which is:
When the FiberBinder is attached, its location on the Fiber is stored as a curvilinear abscissa (fbAbs) taken along the fiber, from a fixed reference on the fiber. The abscissa is independent from the Fiber's model points.
Public Member Functions | |
| FiberBinder () | |
| construct as unattached | |
| FiberBinder (Fiber *f, real a) | |
| construct at the given distance from the origin | |
| void | relocate (Fiber *f) |
| move to a different fiber, at same abscissa | |
| void | relocate (Fiber *f, real a) |
| move to a different fiber, at given position | |
| void | moveToEnd (FiberEnd end) |
| move to the specified FiberEnd (CENTER is also a valid argument) | |
| void | moveTo (real abs) |
| move along the Fiber to specified abscissa, or detach | |
| void | moveBy (real dabs) |
| move along the Fiber by the abscissa offset dabs, or detach | |
| bool | attached () const |
| true if attached | |
| Fiber * | fiber () const |
| Fiber to which this is attached, or zero if not attached. | |
| Vector | pos () const |
| position in space | |
| Vector | dir () const |
| direction of Fiber obtained by normalization | |
| Vector | dirFiber () const |
| the direction of the Fiber at the point of attachment | |
| real | abscissa () const |
| the abscissa, from the origin of the Fiber | |
| real | abscissaFrom (FiberEnd from) const |
| abscissa, counted from the specified FiberEnd (in reversed direction for the PLUS_END) | |
| FiberEnd | nearestEnd () const |
| nearest end to the point specified by the abscissa from the origin | |
| bool | withinP () const |
| true if abscissa is below abscissaP | |
| bool | withinM () const |
| true if abscissa is above abscissaM | |
| bool | within () const |
| true if abscissa is within the fiber boundaries | |
| const PointInterpolated & | interpolation () const |
| the interpolation | |
| void | updateBinder () |
| set a valid PointInterpolated | |
| virtual void | attach (FiberBinder &fb) |
attach at position fb | |
| virtual void | detach () |
| detach from Fiber (can be changed in derived Classes to allow updating) | |
| void | checkFiberRange () |
| check the abscissa against the edges of the fiber, calling handleOutOfRange() if necessary. | |
| virtual void | handleOutOfRange (FiberEnd) |
| called when the Hand abscissa lies outside the range of the Fiber | |
| FiberBinder * | next () const |
| a static_cast<> of Node::next() | |
| FiberBinder * | prev () const |
| a static_cast<> of Node::prev() | |
| virtual void | read (InputWrapper &, Simul &) |
| read More... | |
| virtual void | write (OutputWrapper &) const |
| write | |
| void | checkAbscissa () const |
| check that fbAbs is within Fiber::abscissaM() and Fiber::abscissaP() | |
| int | bad () const |
| check validity of the interpolation (debuging purposes) | |
 Public Member Functions inherited from Node | |
| Node () | |
| constructor set as unlinked | |
| virtual | ~Node () |
| destructor More... | |
| bool | linked () const |
| true if Node is linked | |
| Node * | next () const |
| the next Node in the list, or zero if this is last | |
| Node * | prev () const |
| the previous Node in the list, or zero if this is first | |
| NodeList * | list () const |
| the list where the object is linked, or zero | |
| ObjectSet * | objset () const |
| return associated ObjectSet | |
Protected Attributes | |
| Fiber * | fbFiber |
| the Fiber on which it is attached, or 0 if not attached | |
| real | fbAbs |
| the abscissa from the Fiber origin | |
| Protected Attributes inherited from Node | |
| Node * | nNext |
| the next Node in the list | |
| Node * | nPrev |
| the previous Node in the list | |
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virtual |
1.8.9.1 
